PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000131949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 312aa    MW: 35320.3 Da    PI: 8.7235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000131949genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05154173120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    + C++C+k+F+r  n++ H+
  MDP0000131949 154 FACSICSKTFNRYNNMQMHM 173
                    78*****************9 PP

2zf-C2H211.50.00093238260123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +C k+F  k + ++H +++
  MDP0000131949 238 FMCRKCAKTFAVKGDWRTHEKNC 260
                    89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-5145177No hitNo description
PROSITE profilePS5015710.741154181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5154173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SMARTSM00355190201233IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-5224258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.72E-5224258No hitNo description
SMARTSM0035578238258IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLWNHHVED QNLCFQAPPF IEWLKPSSVF SSSSTSSSSS PCLSEHGTIQ CLPLLSQFTD  60
TKPVKVEDRG VQEEGFGVKE EQMEKVTVAL HIGLPNSTNS TGDKSETYDK NKKVLNLKEE  120
QVVMKKSIHG CSFKAESRFW IPTPAQVLVG PMQFACSICS KTFNRYNNMQ MHMWGHGSEY  180
RKGPDSLKGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFMC  240
RKCAKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLDGFHE  300
DEKECVTGSE EE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378253.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLM5W3N70.0M5W3N7_PRUPE; Uncharacterized protein
STRINGVIT_06s0080g00270.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3